Biomodel.uah.es

Material in English:

Biomodel-1: The structure of proteins and nucleic acids.

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A tutorial for the structure of proteins (from amino acids to quaternary structures), nucleic acids and complexes among them. Uses 3D interactive molecular models with jmol.

Biomodel-2: Lipid Bilayers and the Gramicidin Channel.

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A presentation showing cholesterol, phosphatidyl choline, and then illustrating the assembly of hydrated crystalline bilayer model. Then the gramicidin channel is shown in a hydrated bilayer of phosphatidyl ethanolamine. Uses 3D interactive molecular models with jmol.

Biomodel-3: Structural Biochemistry for Secondary School.

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A self-guided tutorial, complementary to textbooks and lectures, centered on the display of 3D interactive molecular models using jmol.

12 Jan. 2008 update: some tool pages (element colors, mouse help) that were in Spanish are now in English again.

Biomodel-4: DNA Structure Tutorial.

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Molecular models using Jmol.

Water

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Hydrogen bonds and the structure of water: structure of liquid and ice, simulation of 10 water molecules forming a drop, all using Jmol.

Periodic table

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with atomic, ionic and van der Waals radii, using Jmol.

Stereoisomerism in biomolecules

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A collection of exercises for practicing the recognition of structure and stereoisomerism in sugars and amino acids. (Uses Jmol)

Immunology

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HIV-1 gp120 envelope glycoprotein complexed with CD4 antigen and an antibody.
(A Jmol port of the existing Chime version by Richard Hunt)

Virtual labs

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The Cybertory virtual laboratory allows to process DNA samples through restriction enzyme digestion and gel electrophoresis, or multiplex STR PCR and electrophoresis. Starring: Paternity Test
Featured at the 21st Biennial Conference on Chemical Education (BCCE 2010); Denton, TX, USA, 1-5 Aug. 2010

Do-It-Yourself Molecules

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Draw your molecule of choice and get easily a 3D interactive model.
Featured at the 21st Biennial Conference on Chemical Education (BCCE 2010); Denton, TX, USA, 1-5 Aug. 2010

Get 3D structures from their name

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Get a 3D interactive model from the name or ID of the compound (small molecules).

Jmol development

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A collection of contributions to documentation, tests, demo pages.

Contact the author

Personal home page

Main home page (in Spanish)

Published in Dec.2007:

more info A handbook for learning how to use Jmol in teaching, study and research, and how to develop your own tutorials with it.
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