Retrieve and display membrane proteins from the OPM database

Orientations of Proteins in Membrane, University of Michigan, Lomize Group

PDB ID:

Outer side;
perinuclear space;
mitochondrial intermembrane space;
thylakoid space;
ER lumenal side

membrane

Inner side;
nuclear lumen;
mitochondrial matrix space;
chloroplast stroma;
ER cytoplasmic side

Useful resources:

OPM: Orientations of Proteins in Membranes Database, opm.phar.umich.edu
- Lomize MA, Lomize AL, Pogozheva ID, Mosberg HI, doi:10.1093/bioinformatics/btk023
PDBTM: Protein Data Bank of Transmembrane Proteins, pdbtm.enzim.hu
doi:10.1093/nar/gks1169
MemProtMD: automated insertion of membrane protein structures into explicit lipid membranes, MemProtMD.bioch.ox.ac.uk [CC-by]
- Stansfeld PJ et al., doi:10.1016/j.str.2015.05.006