Color protein residues by pLDDT score

For pdb files output from ESM Metagenomic Atlas “Fold Sequence” tool:

ESMfold reports the pLDDT values in the range 0 to 1 (low to high confidence) in the B-factor column of the output pdb file.

For pdb files retrieved from AlphaFold Database:

AlphaFold reports the pLDDT values in the range 0 to 100 (low to high confidence) in the B-factor column of the output pdb file.

pLDDT score   confidence
low
medium
normal
high
   

 

Author: Angel Herráez. Part of the Biomodel.uah.es website

CC by-nc-sa Offered for use under the terms of Creative Commons Attribution – NonCommercial – ShareAlike License.

made with J(S)mol